From the Indigo Renderer Forums. For names of contributors to this list, visit the thread originally started by tungee here.
Key:
if anyone has any information on platform compatibility please contact me.
Runs under Windows
Runs under Linux
Runs under Linux running Wine
Runs under OSX
Freeware
Free software.
Acme Online Masonry Designer
Brick face generator. Must have for anyone who does architectural visualization!http://www.brick.com/md/md2.swf
Chaoscope
A 3D strange attractors rendering software
http://www.chaoscope.org
Genetica
Seamless texture viewer
Lets you get the free libraries and export them as jpegs.
http://www.spiralgraphics.biz/viewer/index.htm
Indigo

The best free unbiased renderer ever in the world ever.
Ever.
http://www.indigorenderer.com
Irfanview
Image viewer and corrector
http://www.irfanview.com
Lego digital designer

Erm.., it's a digital designer for Lego
http://ldd.lego.com/
Mapzone
http://www.mapzoneeditor.com/index.php?PAGE=HOME
Moment of Inspiration
http://moi3d.com
Picasa
Picture library viewer and organizer
Plasma pong
(
being developed)
You will get hooked
http://www.plasmapong.com
Poseray

Supported Import Formats:Wavefront(OBJ & MTL),3D studio(3DS), LightWave(LWO), AutoCAD(DXF), POV-Ray 3.X mesh or mesh2, VRML(WRL, GZ), Raw Triangle(RAW)
Supported Export Formats: POV-Ray full scene with camera, lights, materials and geometry, Wavefront (OBJ & MTL), Moray(UDO, INC)
http://mysite.verizon.net/sfg0000
SBC Archiver
Archiver (command line only - no GUI) with advanced encryption
http://www.geocities.com/sbcarchiver
ShapeShop v002
A very curious modeller. Check the demo reel
http://unknownroad.com/index.html
Super ©
Video format convertor
http://www.erightsoft.com/SUPER.html
TopMod
http://www-viz.tamu.edu/faculty/ergun/research/topology
Voodoo camera tracker

Does what it says on the tin
http://www.digilab.uni-hannover.de/docs/manual.html
Xnormal
normal / ambient occlusion / parallax displacement map generator
http://www.xnormal.net/
Open Source
Free to use and modify software (check the license)
Apophysis
Really fun fractal generator. Renders at extremely high res
http://www.apophysis.org
Arbaro


Tree generator
http://arbaro.sourceforge.net/
Ardour

HD Recorder with unlimited audio tracks, a lot of plug-ins and surround mixing inclusive!
http://www.ardour.org
Audacity


Audio editor
Ayam


Nurbs modelling software
http://ayam.sourceforge.net/ayam.html
Bacula


Network backup solution
http://bacula.org
Blender


Full featured 3D graphics suite
http://blender.org/cms/Home.2.0.html
ClamWin
Free antivirus for windows
http://www.clamwin.com
DVD Flick
Quick and simple video file to DVD convertor
http://www.dvdflick.net/
Electric sheep


Evolving and awesome screen saver
Eraser
File shredder
http://www.tolvanen.com/eraser
Freestyle NPR

For non-photographic renders
GIMP


Somebody had to post it sooner or later.
GREYCstoration


Noise remover
http://www.greyc.ensicaen.fr/~dtschump/greycstoration
Filezilla
File Transfer Protocol (FTP) client and server
http://filezilla.sourceforge.net/
Hugin


GUI for Panotools (see further down in this list)
http://hugin.sourceforge.net/
ImageMagick

Batch image processor
http://www.imagemagick.org/script/index.php
Inkscape


free vector drawing app
http://www.inkscape.org
You can import svg into blender and use it for further modelling. There's a great tutorial on how to use inkscape to draw a floorplan and then import it into blender here:
http://www.opendimension.org/ida/inkscape.php
Ivy Generator

A vegetation creator
http://graphics.uni-konstanz.de/%7Eluft/ivy_generator
Jahshaka


http://www.jahshaka.org
Jedit


http://www.jedit.org
K3DSurf


Visualize and manipulate Mathematical models in three, four, five and six dimensions
http://k3dsurf.sourceforge.net/
Makehuman


http://www.dedalo-3d.com
MeshLab


An open source, portable, and extendible system for the processing and editing of unstructured 3D triangular meshes
http://meshlab.sourceforge.net
MySQL


SQL database that's very fast and versatile
http://www.mysql.org
NGPlant
(source code is platform independent)
Plant modelling software
http://ngplant.sourceforge.net/
Notepad++
Source code editor and Notepad replacement
http://notepad-plus.sourceforge.net
Openlaszlo


Website authoring with flash
http://www.openlaszlo.org
OpenOffice


90% the functionality, 0% of the price
http://www.openoffice.org
Paint.net
Image and photo manipulation software
http://www.getpaint.net/index.html
Panotools


Panoramic imaging tools. See also Open Source: Hugin
http://panotools.sourceforge.net/
Plantstudio
Tool for creating 3D plant models and 2D illustrations
http://www.kurtz-fernhout.com/PlantStudio/
SciTE

http://www.scintilla.org/SciTE.html
Screenweaver

Turns flash into .exe executable
http://screenweaver.com
Scribus


Award-winning professional page layout application
http://www.scribus.net/
Smartision ScreenCopy
Screenshot utility
http://smartision-sc.sourceforge.net/
Swftools

Allows you to author .swf in various ways
http://www.swftools.org
TA Springs


Open Source real time strategy
http://taspring.clan-sy.com
TortoiseSVN
All you ever need for versioning
http://tortoisesvn.net
Truecrypt

For encryption
http://www.truecrypt.org
Ubuntu
(obviously)
http://www.ubuntu.com
VirtualBox

OS virtualization package
http://www.virtualbox.org/
Virtualdub
For linear video editing
http://www.virtualdub.org
Wings 3D


Subdivision modeller
http://www.wings3d.com
Free Versions
Free versions of commercial software
Alibre Express
2D/3D solid modeller
http://www.alibre.com/xpress/software/alibre-design-xpress.asp
ArtRage
Free Edition

Paint program for sketches etc.
http://www.artrage.com/artrage.html
Autostitch
An image stitching program that requires no user-input whatsoever. Fully automatic but, apparently, only a demo.
http://www.cs.ubc.ca/~mbrown/autostitch/autostitch.html
Bricks 'n' tiles
http://www.3d-rekonstruktionen.de/bricksntiles
Google Earth


Has mapquest functionality (directions, point-of-interests, etc.)
http://earth.google.com/download-earth.html


Sketch-based 3D modelling
http://sketchup.google.com
HDRShop
High Dynamic Range image editor
http://www.hdrshop.com
Medusa4

CAD program
Noiseware
(
OSX as a plug-in only)
Noise remover
http://www.imagenomic.com/nwsa.aspx


Landscape generator
http://www.planetside.co.uk/terragen
Vmware

Server/player for all your virtualisation needs
http://www.vmware.com
WinTopo
http://wintopo.com